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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtggtagtggggctaatgcctggctattttaaatttttgtgaaaattctcctggtaactagaaagacttagcatgaaaaagcttttgattctcagGAGCTGCGGCGTATAAAGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCA

Basic information

species Glycine max
transcript GLYMA19G41130.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41130.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g46510.2 (Oryza sativa), 3'ss of exon 8
gtgtggtagtggggctaatgcctggctattttaaatttttgtgaaaattctcctggtaacta-gaaagacttagcatgaaaaagcttttgattctcagGAGCTGCGGCGTATAAAGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCA
                 || |       ||     |  |||| |   || |  || ||  || | ||||  |        |     | |  |   |||||  |  | || || || ||||| || ||| | |||||||| ||||| || || ||||| |||||||| || ||||||||||||||||| ||||| ||||
---------------gtatactcactatttccgtgtgattgt-attttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcagGAAATAAGACGCATTAAACCAGTACCTAAACTTGCTTGCCATAGTGTTGCATCGTGGTGTCATCCTCGTGCACCAAACCTTGATATTCTGACTTGTGTCA

upper sequence: GLYMA19G41130.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G000177_T01 (Zea mays), 3'ss of exon 8
gtgtggtagtggggctaatgcctggctattttaaatttttgtg-aaaattctcctggtaactagaaagactt-agcatgaa--aaagcttttgattctcagGAGCTGCGGCGTATAAAGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCA
                         ||  | ||||| ||||    || || |  |  | | ||     | |  ||| | ||  ||  | |||| | |||||||  |  |||| || |||||||| || ||| | ||||| || ||||| || || ||||| ||||| || || ||||||||||||||||||||||| ||||
----------------------gtacttatataaatatttgcatgaagttatattatttattatttcaagtagagcttaaagtaacacatttgctgctcagGAAATAAGGCGCATTAAGCCAGTGCCTAAACTTGCTTGTCATAGTGTTGCATCGTGGTGTCATCCCCGTGCACCAAACCTTGATATTCTAACTTGTGTCA

upper sequence: GLYMA19G41130.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgtggtagtggggctaatgcctggctattttaaatttttgtgaaaattctcctggtaactagaaagacttagcatgaaaaagcttttgattctcagGAGCTGCGGCGTATAAAGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCA
  ||  | |||   || |||  ||| | ||| | |||||   ||    ||   |  ||||  | |   ||             |||||  |   |||||||| ||  | || || || || || ||| | |||||||||||||| || |||||||| || |||||||| ||||||||||||||| | |||||||| |
--gtaatggtgtatctcatgtatggatttttcatattttcccgat--ctcatttattaacatgcatatct------------acttttattctacagGAGCTACGTAGAATTAAACCTGTCCCGAAACTAGCTTGCCACAGTGTTGCATCTTGGTGTCACCCTCGAGCGCCAAACCTTGATATTTTGACTTGCGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaattctcctggtaactagaaagacttagcatgaaaaagcttttgattctcagGAGCTGCGGCGTATAAAGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACTTGCGTCA
                                         ctttt  CT-rich tract
                                atgaaaaa  TA-rich tract