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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtctgattcttgcataaacagttgtgttattttaatggtgtaagctgcttataaaattttgatgttcaattttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAA

Basic information

species Glycine max
transcript GLYMA19G40930.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40930.4 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G094123_T01 (Zea mays), 3'ss of exon 7
-------------------gtat-atgtctgattcttgcataaacagttgtgtta----ttttaatggtgtaagctgcttataaaat-tttgatgttcaat-----tttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAA
                    |||  |  |   | |||   ||| | | ||    |      |||||      |  |  || ||| ||  ||| || | |||     ||| | |||| || |||||||||||||||||||| || ||||| ||||| || || ||| | || ||||| ||||| || |||||||| || |  ||||| ||||| |
gtattgatacattcctaaaatattgtagcctttccttaactaacctgatgaaaaaaggaaattaattccagtattttattgtaatatgcttgttgctaaatattgttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTCTTGGTCAAAACTTTGCCAAGATGTTTGATATCACTTTTGAGAATGAGA

upper sequence: GLYMA19G40930.4 (Glycine max), 3'ss of exon 8
lower sequence: AT3G62120.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatatgtctgattcttgcataaacagttgtgttattttaatg-gtgtaagctgcttataaaattttgatgttcaattttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAA
   |||||    || |||     | | ||    | ||||  || | ||   ||   | | || ||  ||  ||  |||||  ||||| || ||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||| ||||| || ||||||||||| |||||||| ||||| |
--gtatgtaatctttttgttctgagacttaaccttttttcttgtgggtttactctctgtgaagtt--gaactttgatttta-tagGCTTTCATTCCAAACACTGGTCGTGGTGTACAAGGTGCAACCTCTCATTGTTTGGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGA

upper sequence: GLYMA19G40930.4 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0005g02620.t01 (Vitis vinifera), 3'ss of exon 8
---------------------------------------------------gtatatgtctgatt-cttgcataaacagtt--gtgttattttaatggtgtaagctgcttataaaattttgatgttcaattttgct-agGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAA
                                                    |  ||  |  |    |||||| |||  ||  ||||| | | |  |  |||| |||  || |  || |   |||| |  |||  | |||| |||||||||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| ||||||||||| |||| |||||||||||| |
gtacttgatttttatttatctgcttgcactccatcctttgtccatcatccaatgaattgcaaaccgtttgcattaactattctgtgttctatgatagaagtaaactgtgta-attatgtctgtgtttaccttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGTTTAGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGA

upper sequence: GLYMA19G40930.4 (Glycine max), 3'ss of exon 8
lower sequence: EFJ38227 (Selaginella moellendorffii), 3'ss of exon 5
gtatatgtctgattcttgcataaacagttgtgttattttaatggtgtaagctgcttataaaattttgatgttcaattttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAA
                    |||| |||    | |||  ||   || |     |||||  || |  | |  |   || | | |||||||||||||   |||||||||||| ||||| ||||| || || ||||| |||||||| || |||||  ||||||| || ||    |||||  | || |
-------------------gtaaaaagtc---tgattcgaagcctgaa-----cttattcaact--ggtact-gtttgttccagGCATTTATTCCGCTCACTGGTCGTGGAATCCAGGGTGCTACCTCGCATTGCTTGGGCCAGAACTTTGCGGAAATGTTCGACATTGTTTTTGAGGACGAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193568519|gb|FK525192.1|FK525192
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACTAGTGTTGGG                         GCATTTATTCCAAACACTGGCCGTGGTATACAAGGTGCAACTTCTCATTGT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|208144861|gb|GD943452.1|GD943452
EST:     ACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: ACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|207831009|gb|GD805067.1|GD805067
EST:     GTGAGTCTTTGAGAAGTTTGTCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: GTGAG-C-TTGAGAAGTTTG-CTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|193659280|gb|FK605947.1|FK605947
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGG
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGG
EST: gi|193330683|gb|FK296175.1|FK296175
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|193377536|gb|FK341060.1|FK341060
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACTAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|208199816|gb|GD998559.1|GD998559
EST:     TACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: TACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|208174450|gb|GD968159.1|GD968159
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|207844905|gb|GD817456.1|GD817456
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|9899427|gb|BE608395.1|BE608395
EST:     CAAGTGAGCTGGAGAAGTTTGCTGGTGGACTCTACACTACCTGTGCTGAG                         GCATTTATTCCAAACACTGGATCG-GGTAT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGG-TCGTGGTAT
EST: gi|207734424|gb|GD713312.1|GD713312
EST:     AAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: AAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|193533168|gb|FK493688.1|FK493688
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACTAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|207758541|gb|GD726795.1|GD726795
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACTAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATACAAGGT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGT
EST: gi|193382732|gb|FK347217.1|FK347217
EST:     AGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: AGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|208320376|gb|GE122097.1|GE122097
EST:     CTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: CTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|207783076|gb|GD751077.1|GD751077
EST:     GTGAGCTTGAGTAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: GTGAGCTTGAG-AAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|208315695|gb|GE110565.1|GE110565
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
EST: gi|208093213|gb|GD896396.1|GD896396
EST:     AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAG                         GCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT
genomic: AAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGgtatatgtct ... attttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttattttaatggtgtaagctgcttataaaattttgatgttcaattttgctagGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAA
                                              ttttgct  CT-rich tract
                         ttataaaattttgatg  TA-rich tract