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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaccttgggcagcagtcatttctttgagtatatatttgatatgttatatgtatgagttgtaattctcaatatgaaaatacctgagcattttgatttggccatgttaattaggatgtgctgttatatccaatgctctttgttttaaaatattgtaaagatgattgatttgttgagctgttatatctttgcagTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACAAAAGATACCTTTTATTCATATATATC

Basic information

species Glycine max
transcript GLYMA19G39560.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39560.2 (Glycine max), 3'ss of exon 8
lower sequence: AT4G03200.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtttaccttgggcagcagtcatttctttgagtatatatttgatatgttatatgtatgagttgtaattctcaatatgaaaatacctgagcattttgatttggccatgttaattaggatgtgctgttatatccaatgctctttgttttaaaatattgtaaagatgattgatttgttgagctgttatatctttgcagTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACAAAAGATACCTTTTATTCATATATATC
                                                                                                        |  |   |    |   | | ||||  |||| |        || |  |||||||| | |   |||   |||| |||  || ||       ||||||||||||||||||||| ||||| |||||||||||||| || |||||||| || || || |  |||   || || || ||     | ||||| ||| |  |
--------------------------------------------------------------------------------------------------------gtaaaacttcaaacagtatcctgtagtatcaagg------tgatgaaaaatattttgagattgacgcattttttg--ctatttgtctggtgcagTTCCACATTTTGAGAAAATGCTGTATGATCAAGGGCAACTAGCTAATGTGTACCTCGACGGTTTTAGCATTACCAAGGACGTTATGTATTCTTATGTGGC

upper sequence: GLYMA19G39560.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtttaccttgggcagcagtcatttctttgagtatatatttgatatgttatatgtatgagttgtaattctcaatatgaaaatacctgagcattttgatttggccatgttaattaggatgtgctgttatatccaatgctctttgttttaaaatattgtaaagatgattgatttgttgagctgttatatctttgcagTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACAAAAGATACCTTTTATTCATATATATC
                                                                                                 |   ||   ||| ||  || ||||     | | |   |  |    ||| | |     ||||||   | ||||           | || | |    |||||||||||||||||||||| ||| | ||||| || |||||||| ||||||| |||||||||||  ||||| ||||||||||||  ||| ||||||| | | ||
------------------------------------------------------------------------------------------------cttcctttctcatttttgtt-ggataactggctttgctctgtagcatttatctatggttattgttttg-tgataatagctaaaggttggtgttctgttgcagTTCCACATTTTGAGAAAATGTTATATGACCAGGGGCAGCTCGCTAATGCTTATCTAGATGTTTTTTCCATCACAAAAGATGTCTTCTATTCATGTGTGTC

upper sequence: GLYMA19G39560.2 (Glycine max), 3'ss of exon 8
lower sequence: PP1S25_348V6.1 (Physcomitrella patens), 3'ss of exon 8
gtaagtttaccttgggcagcagtcatttctttgagtatatatttgatatgttatatgtatgagttgtaattctcaatatgaaaatacctgagcattttgatttggccatgttaattaggatgtgctgttatatccaatgctctttgttttaaaatattgtaaagatgattgatttg--ttgagctgttatatctttgcagTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACAAAAGATACCTTTTATTCATATATATC
                                                                                              |||| || |  |  || | |  |  ||| | |   | ||  |||  | |       | ||     |||   |  || |  ||  |      | |||  ||||||||| || |||||||||||||||||||||||  | |  ||||| |  |||||||| || ||||| ||| || |||  || ||       || || ||| |  |
----------------------------------------------------------------------------------------------ttttaatctaac--tggtga--aaaatgagtttccaaatgtaat--tttaaaagaaacaacgcgctaatcctcgtttacgtgaatctgttggctattcctttgcagTGCCTCATTTTGAGAAGATGCTTTATGACAACGCTCAGCTCGTGAATGTTTACCTCGATGCTTTTGCTGTCAGTAAGGACCTGACATACTCGTATGTCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttaaaatattgtaaagatgattgatttgttgagctgttatatctttgcagTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACAAAAGATACCTTTTATTCATATATATC
                       gattgat  putative branch site (score: 4)
                                            tatcttt  putative PPT
     ttaaaatattgtaaag  TA-rich tract