1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aattttgtttaatacatcttttcccctttctctacttacttgttgcatgtgttctttgagtttgttgtatttacatctgtcaaaatgttaagcactgcagGAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG
species | Glycine max |
transcript | GLYMA19G37570.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTACG GAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTEST: gi|208030492|gb|GD828404.1|GD828404
genomic: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCT-CGgtaagcccct ... agcactgcagGAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTT
EST: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG GAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCEST: gi|207761700|gb|GD734631.1|GD734631
genomic: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
EST: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG GAGGTTGCTGTGAAAAATTCTGATGGAAACAAAGACTTCAAAGGTGAACGCEST: gi|193731488|gb|FK663634.1|FK663634
genomic: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTGAAAA-TTCTGATGGAA-CAA-GACTTCAAAGGTGAACGC
EST: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG GAGGTTGCTGTGAAAATTEST: gi|208324413|gb|GE125714.1|GE125714
genomic: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTGAAAATT
EST: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG GAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
genomic: GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCGgtaagcccct ... agcactgcagGAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTC
catgtgttctttgagtttgttgtatttacatctgtcaaaatgttaagcactgcagGAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG
aaaatgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttgtttaatacatcttttcccctttctctacttacttgttgcatgtgttctttgagtttgttgtatttacatctgtcaaaatgttaagcactgcagGAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA