1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtttctaatttaaaactcgtggcatgatcactattagaacttgtttgccacgggcttaaatgaataaatcctctttcagGAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGATAATGCGGTACCTCGGCCTTGCTCCTCCAGTTGGTTCTCCCTTTTGAGTTT
species | Glycine max |
transcript | GLYMA19G37070.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGAT GAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGATAEST: gi|13482342|gb|BG511685.1|BG511685
genomic: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGATgtaagtttct ... cctctttcagGAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGATA
EST: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGAT GAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGATAEST: gi|10239014|gb|BE807902.1|BE807902
genomic: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGATgtaagtttct ... cctctttcagGAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGATA
EST: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGAT GAGGTAACATACCCAATGAAGTCTGAAAGEST: gi|208284330|gb|GE086348.1|GE086348
genomic: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGATgtaagtttct ... cctctttcagGAGGTAACATACCCAATGAAGTCTGAAAG
EST: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGAT GAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGAEST: gi|27426990|gb|CA938510.1|CA938510
genomic: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGATgtaagtttct ... cctctttcagGAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGA
EST: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGAT GAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGATA
genomic: AAGAGAAACGAAGAGGGAAAAGGGAACGTAAACCGAAAGTTCACTTTGATgtaagtttct ... cctctttcagGAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGATA
tgatcactattagaacttgtttgccacgggcttaaatgaataaatcctctttcagGAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGATAATGCGGTACCTCGGCCTTGCTCCTCCAGTTGGTTCTCCCTTTTGAGTTT
tcctctttc CT-rich tract
ttaaatgaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctaatttaaaactcgtggcatgatcactattagaacttgtttgccacgggcttaaatgaataaatcctctttcagGAGGTAACATACCCAATGAAGTCTGAAAGAAAGGTTCGTCGGTTGAAGATAATGCGGTACCTCGGCCTTGCTCCTCCAGTTGGTTCTCCCTTTTGAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC