1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttctgattctttaaaggcctgccttctctttttggtattttacattttgaatgatagagtattattaatttttttgaactttctgttttttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGGCATGCCAAATTGTTTTTGCCTCACAGAAGCATGTCAGAGTTGAAAAAAC
species | Glycine max |
transcript | GLYMA19G35140.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGGEST: gi|4296151|gb|AI442434.1|AI442434
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: GTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGGEST: gi|9259181|gb|BE347328.1|BE347328
genomic: GTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGGEST: gi|8283952|gb|BE021511.1|BE021511
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: GTGTAGCAAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGGEST: gi|151410949|gb|EV280764.1|EV280764
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGGEST: gi|21256538|gb|BQ453426.1|BQ453426
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
EST: GTGTAGCAAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAG TTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
genomic: GTGTAGCTAGTCCAACAGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGgtaagtcgtt ... ttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGG
ttttgaatgatagagtattattaatttttttgaactttctgttttttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGGCATGCCAAATTGTTTTTGCCTCACAGAAGCATGTCAGAGTTGAAAAAAC
tattaat putative branch site (score: 2)
tttttttgaactttct CT-rich tract
agtattattaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgattctttaaaggcctgccttctctttttggtattttacattttgaatgatagagtattattaatttttttgaactttctgttttttccctccagTTTTTAAATCTCTTTGGTGATGTTCAATCTATCAAGAGAGCTGAAGATAGGCATGCCAAATTGTTTTTGCCTCACAGAAGCATGTCAGAGTTGAAAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC