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gtactttctcatatcaatgctattatttttaaatttgcttaaaaaatacttgtgctttgcatttatctaaacttttctggggcattaactggttcagGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATCAGGTCCAAGAAAAAGGCAACACAGAAGCATCCCACTTTTT
species | Glycine max |
transcript | GLYMA19G35010.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCAT GAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTEST: gi|13478346|gb|BG507860.1|BG507860
genomic: CGTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATgtactttctc ... actggttcagGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGT
EST: CGTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCAT GAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTEST: gi|4287407|gb|AI441185.1|AI441185
genomic: CGTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATgtactttctc ... actggttcagGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGT
EST: CGTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCAT GAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTEST: gi|33388999|gb|CA852206.1|CA852206
genomic: CGTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATgtactttctc ... actggttcagGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGT
EST: CGTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCAT GAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGT
genomic: CGTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATgtactttctc ... actggttcagGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGT
aaaatacttgtgctttgcatttatctaaacttttctggggcattaactggttcagGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATCAGGTCCAAGAAAAAGGCAACACAGAAGCATCCCACTTTTT
cattaac putative branch site (score: 2)
atttatctaaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttctcatatcaatgctattatttttaaatttgcttaaaaaatacttgtgctttgcatttatctaaacttttctggggcattaactggttcagGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATCAGGTCCAAGAAAAAGGCAACACAGAAGCATCCCACTTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC