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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcaattgcaagttccatttcttcatatgctggtttgaagtggagtcattaatgttactgatatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATCATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGC

Basic information

species Glycine max
transcript GLYMA19G32010.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaatgc---aattgcaagttccatttcttcatatgctggtttgaagtggagtcattaatgttactgatatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATCATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGC
|||| ||   ||| |          ||   | ||   |  | ||| |    ||  | | | ||||     | | ||||| ||||| || ||| |||| ||||| ||  | ||| | || ||| |  | ||||||||||||||| | |||||||| ||||| |||||||| | |||||
gtaaagctagaatcgtctaacttgcttagccttagaata-tctgaggattggttctcatttttaccttcctctacagGATTTTGTTGCTAGTGAAAATAGGCCAAAGGCAACACGCATAACCCGTGTTATTCAAGGTTATGAGCCCCATTCTTTCAAGTCTAACTTTGACTCTTGGC

upper sequence: GLYMA19G32010.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 7
gtaatgcaattgcaagttccatttcttcatatgctg-gtttga-agtggagtcattaatgttactgatatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATCATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGC
    |  ||    |   ||||||| | ||| | ||   | | | |  | | ||     |   | |    |  |||||| |||||  | || ||||| || || ||  | ||  |  | ||| |  | |||||||| |||||||||||||| || |||||||||||||||| |||||
---gtagaagcttatcatccatttatccatgttctttatataacaacgaactctcatctccaattttcttcctcagGAATTTGTTTCTAGCCAAAATAGACCAAAGGCAACTCGTGTAACCCGGGTTATTCAAGGGTATGAGACACATTCATTCAAGTCCAACTTTGATTCTTGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207698474|gb|GD680657.1|GD680657
EST:     GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAG                         GAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC
genomic: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaat ... atatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC
EST: gi|207710261|gb|GD689727.1|GD689727
EST:     GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAG                         GAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC
genomic: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaat ... atatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC
EST: gi|193377526|gb|FK340168.1|FK340168
EST:     GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAG                         GAGTTTGTCGCAAGTCA
genomic: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaat ... atatgttcagGAGTTTGTCGCAAGTCA
EST: gi|151395921|gb|EV265798.1|EV265798
EST:     GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAG                         GAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC
genomic: GCCGGGTAACACAAGTTGAAGATCGAAAAGCAGCTTGTCAAGCAGCTGAGgtaatgcaat ... atatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcttcatatgctggtttgaagtggagtcattaatgttactgatatgttcagGAGTTTGTCGCAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATCATTCAAGGTTATGAGACACATTCTTTTAAGTCCAACTTTGATTTTTGGC
                                        tactgat  putative branch site (score: 2)
                                attaatgtta  TA-rich tract