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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataataatggtcatgggatcttcccatgtgcattttagcatttccggctgattcacttacagtgatggtttcattttggtttctttagGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG

Basic information

species Glycine max
transcript GLYMA19G28780.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G28780.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 3'ss of exon 8
----------------gtataataatgg---tcatgggatcttcccatgtgcattttagcatt--tccggctgattcacttacagtgatggtttcattttggtttctttagGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG
                || |  |  | |   || |||| |||||||   || ||||||   ||   | || || |    | |  |  ||  ||| || |      ||| |||| ||||||||||| || ||||| |||||||||||||| || || |||||||||||| |||| |||||||||||
gtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcc-caacttcagGTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagcatttccggctgattcacttacagtgatggtttcattttggtttctttagGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG
                    cacttac  putative branch site (score: 2)
                                              tttcttt  putative PPT
                                   tttcatttt  TA-rich tract