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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtataattgagccttggcatagaggaaaaatacaattatttgaaggatgattttagacactgttaagttttcctatttgtgcttgcagGCATTATTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAG

Basic information

species Glycine max
transcript GLYMA19G27500.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27500.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 9
gtttgtataattgagccttggcatagaggaaaaatacaattatttgaaggatgattttagacactgttaagttttcctatttgtgct----tgcagGCATTATTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAG
|||||||  |       || |  ||   |||     | |||| |  | | | || || | |||| | | |  |||     |     |    | |||||  || | || ||||| |||||||| || ||||| |||||| ||||||| || || || || ||||||||||| ||||| |||||||| |||
gtttgtagcagcacaattttgattacgagaa-----ccattaatgtatgtaagaattcaaacacagctgaactttttatctcaaaatgagctacagGCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattatttgaaggatgattttagacactgttaagttttcctatttgtgcttgcagGCATTATTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTAGATATTGTAAGCACTCGCATGCTTGGTCAGTTTGGGTTCCTTGCTAAG
             atgatttta  TA-rich tract