1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acttttctcgcgtttttatcactcaccacatattcttgtcttgttatcctaaaatgctatggtccttattcactactttttactttatatttttccaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCTCCATCCTTCTTG
species | Glycine max |
transcript | GLYMA19G27360.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAAGATTGAGGACTTCTCTGTTGCAATGGTGCTATACCAGCTATGGAGAG GTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCEST: gi|58018243|gb|CX704985.1|CX704985
genomic: AAAGATTGAGGACTTCTCTGTTGCAATGGTGCTATACCAGCTATGGAGAGgtattattta ... ttttccaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGC
EST: AAAGATTGAGGACTTCTCTGTTGCAATGGTGCTATACCAGCTATGGAGAG GTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCEST: gi|21639034|gb|BM140080.1|BM140080
genomic: AAAGATTGAGGACTTCTCTGTTGCAATGGTGCTATACCAGCTATGGAGAGgtattattta ... ttttccaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGC
EST: AAAGATTGAGGACTTCTCTGTTGCAATGGTGCTATACCAGCTATGGAGAG GTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCEST: gi|6846822|gb|AW349112.1|AW349112
genomic: AAAGATTGAGGACTTCTCTGTTGCAATGGTGCTATACCAGCTATGGAGAGgtattattta ... ttttccaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGC
EST: GGTGCTATACCAGCTATGGAGAG GTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGC
genomic: GGTGCTATACCAGCTATGGAGAGgtattattta ... ttttccaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGC
atcctaaaatgctatggtccttattcactactttttactttatatttttccaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCTCCATCCTTCTTG
tcctaaa putative branch site (score: 2)
ctttttactttatatt putative PPT
ttattcactacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttttctcgcgtttttatcactcaccacatattcttgtcttgttatcctaaaatgctatggtccttattcactactttttactttatatttttccaaagGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCTCCATCCTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - -cactcac
- - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatg