1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttttcccgaacatgctttcacttcaaatgggttagtatacctaatgcaaaatttgcatgttaaggttttctgtctcattttgtttccatttgtatacagACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACGCTTCAACGATCTTGTAAGATCGTTATCTGATGATCTGAAGGAGAAAAGT
species | Glycine max |
transcript | GLYMA19G23550.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCACCTGAATCGGACGTCAAACGTGCAGAACTGGAGGCATTGGCCAGAAG ACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACGEST: gi|10236881|gb|BE805769.1|BE805769
genomic: GCACCTGAATCGGACGTCAAACGTGCAGAACTGGAGGCATTGGCCAGAAGgtactgaata ... ttgtatacagACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACG
EST: GCACCTGAATCGGACGTCAAACGTGCAGAACTGGAGGCATTGGCCAGAAG ACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACGEST: gi|31460252|gb|CD402220.1|CD402220
genomic: GCACCTGAATCGGACGTCAAACGTGCAGAACTGGAGGCATTGGCCAGAAGgtactgaata ... ttgtatacagACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACG
EST: GCACCTGAATCGGACGTCAAACGTGCAGAACTGGAGGCATTGGCCAGAAG ACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACG
genomic: GCACCTGAATCGGACGTCAAACGTGCAGAACTGGAGGCATTGGCCAGAAGgtactgaata ... ttgtatacagACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACG
tgcaaaatttgcatgttaaggttttctgtctcattttgtttccatttgtatacagACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACGCTTCAACGATCTTGTAAGATCGTTATCTGATGATCTGAAGGAGAAAAGT
ttttgtttccattt CT-rich tract
attttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttcccgaacatgctttcacttcaaatgggttagtatacctaatgcaaaatttgcatgttaaggttttctgtctcattttgtttccatttgtatacagACTGCAAGGAATCACCAAATCCATGTCAAGGTTCCCAACCTTCAAGCGACGCTTCAACGATCTTGTAAGATCGTTATCTGATGATCTGAAGGAGAAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - acatgct
- - - - - - - - - -cacttca
- - - - - - - - - - - - - - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt