1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaattgatgaggagaaaacataatgttgattaatacctgttaaaatgttctaattagtgggaattgattgactgaattattgtgggtttctttgtgcttctttagTTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAAGAGGCAGCATTTGCGCTTGCAGCACTGATGGAAATTCCTTCTCAGTATA
species | Glycine max |
transcript | GLYMA19G07140.5 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATTTTCAG TTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAAEST: gi|19270006|gb|BM886262.1|BM886262
genomic: TGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATTTTCAGgtaattgatg ... gcttctttagTTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAA
EST: AAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATTTTCAG TTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAAEST: gi|58022723|gb|CX709464.1|CX709464
genomic: AAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATTTTCAGgtaattgatg ... gcttctttagTTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAA
EST: TGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATTTTCAG TTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAAEST: gi|10846396|gb|BF069304.1|BF069304
genomic: TGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATTTTCAGgtaattgatg ... gcttctttagTTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAA
EST: AATATCCCAGCCCGGGTCTTTGATAATTTTCAG TTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAAEST: gi|193427392|gb|FK394846.1|FK394846
genomic: AATATCCCAGCCCGGGTCTTTGATAATTTTCAGgtaattgatg ... gcttctttagTTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAA
EST: TGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATTTTCAG TTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAAEST: gi|51334738|gb|CO978604.1|CO978604
genomic: TGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATTTTCAGgtaattgatg ... gcttctttagTTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAA
EST: TGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATNNNCAG TTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAA
genomic: TGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAATTTTCAGgtaattgatg ... gcttctttagTTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAA
taattagtgggaattgattgactgaattattgtgggtttctttgtgcttctttagTTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAAGAGGCAGCATTTGCGCTTGCAGCACTGATGGAAATTCCTTCTCAGTATA
tttctttgtgcttctt CT-rich tract
tgaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgatgaggagaaaacataatgttgattaatacctgttaaaatgttctaattagtgggaattgattgactgaattattgtgggtttctttgtgcttctttagTTTGTGAATTTCACAGAAATTATGTCAAAGAATATTCCTCCTTCTCGAAAAGAGGCAGCATTTGCGCTTGCAGCACTGATGGAAATTCCTTCTCAGTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA