1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgattatcctgtaggttttgttcaacaatgttttttctattcaaatatcttttcttatatacctgctttgtcacagTAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGGACATGATGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAAT
species | Glycine max |
transcript | GLYMA19G07140.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCACTGTGGATGCCATTGTTGAGGCCAG TAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGGAEST: gi|58022723|gb|CX709464.1|CX709464
genomic: GCACTGTGGATGCCATTGTTGAGGCCAGgtgattatcc ... tttgtcacagTAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGGA
EST: GCACTGTGGATGCCATTG-TGAGGGCCAG TAAATTCCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGGEST: gi|10236797|gb|BE805685.1|BE805685
genomic: GCACTGTGGATGCCATTGTTGA-GGCCAGgtgattatcc ... tttgtcacagTAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGG
EST: AGACTAAGTCCACAGGAGCAGAGCACTGTGGATGCCATTGTTGAGGCCAG TAAATGTCCTCTATCAATCATATTGGTTGGTGTTGGAGATGGTCCTCGCTAEST: gi|193427392|gb|FK394846.1|FK394846
genomic: AGACTAAGTCCACAGGAGCAGAGCACTGTGGATGCCATTGTTGAGGCCAGgtgattatcc ... tttgtcacagTAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGGA
EST: CCATTGTTGAGGCCAG TAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGGA
genomic: CCATTGTTGAGGCCAGgtgattatcc ... tttgtcacagTAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGGA
tcaacaatgttttttctattcaaatatcttttcttatatacctgctttgtcacagTAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGGACATGATGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAAT
cctgcttt CT-rich tract
aatgttttttctattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattatcctgtaggttttgttcaacaatgttttttctattcaaatatcttttcttatatacctgctttgtcacagTAAATTTCCTCTTTCAATCATATTGGTTGGTGTTGGAGATGGTCCTTGGGACATGATGAAGGAGTTTGATGACAATATCCCAGCCCGGGTCTTTGATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG