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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcctgaataaccgagttttgttacaactatgagctattttttcccctccttataactgattatcattgcagCATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAATTCAAGATCCATGCCTCAAATCTTCCATTCCTCACTTTCCCCCTGTATAT

Basic information

species Glycine max
transcript GLYMA19G05450.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343614|gb|CO984347.1|CO984347
EST:     TTAGTGGATCACTTCCACAATCGTGGCTTGGATCGTTCGATTTTCTTAAG                         CATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAAT
genomic: TTAGTGGATCACTTCCACAATCGTGGCTTGGATCGTTCGATTTTCTTAAGgtgtgtcctg ... atcattgcagCATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAAT
EST: gi|9903021|gb|BE611989.1|BE611989
EST:     TTAGTGGATCACTTCCACAATCGTGGCTTGGATCGTTCGATTTTCTTAAG                         CATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAAT
genomic: TTAGTGGATCACTTCCACAATCGTGGCTTGGATCGTTCGATTTTCTTAAGgtgtgtcctg ... atcattgcagCATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAAT
EST: gi|31462722|gb|CD404750.1|CD404750
EST:     TTAGTGGATCACTTCCACAATCGTGGCTTGGATCGTTCGATTTTCTTAAG                         CATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAAT
genomic: TTAGTGGATCACTTCCACAATCGTGGCTTGGATCGTTCGATTTTCTTAAGgtgtgtcctg ... atcattgcagCATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttacaactatgagctattttttcccctccttataactgattatcattgcagCATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAATTCAAGATCCATGCCTCAAATCTTCCATTCCTCACTTTCCCCCTGTATAT
                                 ttataactgattat  TA-rich tract