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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tatatttcttccaaaatatatttactgctccaacatattattggacatgtctggactcccctcccaaatgctccaacatattatttgacaactatttttcctgatatttctttacagtTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGG

Basic information

species Glycine max
transcript GLYMA18G52270.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52270.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 8
tatatttcttccaaaatatatttactgctccaacatattattggacatgtctggactcccctcccaaatgctccaacatattatttgacaactatttttcctgatatttctttacagtTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGG
               || || |    |      |||  | |||   |       |     || |   |   |     | |  |  ||  ||  | ||  | |  ||||| |  ||||||||| |||||||||||| ||||| |   ||||||||| ||||||||||||||||| |||| 
---------------atgtagtataagtcttctcattcttttgattagtaagcaatcttactacatgacattatcttaaaggaactgctaatcagttaactt--tatttgtgaacagTTGTTTGGTCTTGGTGTTGCCAATATCTGTGGTTCATTCTTTTCAGCATACCCCACGACAG-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaatgctccaacatattatttgacaactatttttcctgatatttctttacagtTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAGG
                                   tcctgat  putative branch site (score: 3)
                                         tatttcttt  CT-rich tract
              atattatttgacaact  TA-rich tract