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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttattctatgaacttgagcatgccatgccatgcaggtcatacatatttgttgtgattttgaagatgataactgtgcatactttgcacattgctgcttccttcccagGTGGTGAGAGCTTTAGATTCCTTGGATGAGTTTACGGATCTCAATAACGGAATGAAACCGGGACAGAGTTCGGTGTTTGATTCGGCGCAGCAATCTGCAC

Basic information

species Glycine max
transcript GLYMA18G51520.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298178965|gb|HO024700.1|HO024700
EST:     CCGCAGCCTGTGTACGCCACTCATCGGTGAAGAGACCACGCATGAGTCAG                         GTGGTGAGAGCTTCAGATTCCTTGGATGAGTTTACGGATCTCAATAACGGA
genomic: CCGCAGCCTGTGTACGCCACTCATCGGTGAAGAGACCACGCATGAGTCAGgtaattttat ... tccttcccagGTGGTGAGAGCTTTAGATTCCTTGGATGAGTTTACGGATCTCAATAACGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgattttgaagatgataactgtgcatactttgcacattgctgcttccttcccagGTGGTGAGAGCTTTAGATTCCTTGGATGAGTTTACGGATCTCAATAACGGAATGAAACCGGGACAGAGTTCGGTGTTTGATTCGGCGCAGCAATCTGCAC
             tgataac  putative branch site (score: 2)
                                     ttgctgcttccttccc  putative PPT
            atgataa  TA-rich tract