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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttccttgaacattatgtacattagtttgtaatccatattctatgtctggtgacacgcccgatgtggggtacagGTAGCGCGAAAAATGAAGGATGAAGAGGGTTTTTACTACCCACACAACCTTGATTTCCGAGGGCGTGCATATCCCATGCACCCACACTTAAATCACCTTG

Basic information

species Glycine max
transcript GLYMA18G51160.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51160.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0083g00790.t01 (Vitis vinifera), 3'ss of exon 8
gtaagcttccttgaacattatgtacattagtttgta-atccatattct--atgtctggtgacacgcccga-tgtggggtacagGTAGCGCGAAAAATGAAGGATGAAGAGGGTTTTTACTACCCACACAACCTTGATTTCCGAGGGCGTGCATATCCCATGCACCCACACTTAAATCACCTTG
|| || | | ||  || |  |     |  | |  || ||| ||||||   || | |    || |  |  | | | |||  ||||||||  ||||||||||||||||||| ||||| | |||||||||||||||||| || ||||| ||||||||||||||||||||  |||||||||| ||||
gttagatgcgttttacttcctaaggctgtgatcatatatcaatattcccaatatataccaactcttctaaattttgggagcagGTAGCAAGAAAAATGAAGGATGAAGATGGTTTCTTCTACCCACACAACCTTGACTTTCGAGGCCGTGCATATCCCATGCACCCTTACTTAAATCATCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattagtttgtaatccatattctatgtctggtgacacgcccgatgtggggtacagGTAGCGCGAAAAATGAAGGATGAAGAGGGTTTTTACTACCCACACAACCTTGATTTCCGAGGGCGTGCATATCCCATGCACCCACACTTAAATCACCTTG
                atattctat  TA-rich tract