1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...actattatctagtggtgagcactgatcagtgtgtactccctttttatgatttccaaagcttatgcaaggctttattattgacataaatgaattatgacagCTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAAATATGGTGAAGTATGTTGAGCAGCACCCATTTGGTCAAGAAGCTATCAA
species | Glycine max |
transcript | GLYMA18G50410.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTGTTCCCGCGCACGTTCACATTTCAGAATGAAAGTGACAATTCACTAG CTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAAEST: gi|193643728|gb|FK590803.1|FK590803
genomic: AGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGACAATTCACTAGgtatggtaca ... attatgacagCTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAA
EST: AGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGACAATTCACTAG CTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAA
genomic: AGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGACAATTCACTAGgtatggtaca ... attatgacagCTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAA
atgatttccaaagcttatgcaaggctttattattgacataaatgaattatgacagCTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAAATATGGTGAAGTATGTTGAGCAGCACCCATTTGGTCAAGAAGCTATCAA
tattgac putative branch site (score: 2)
tttattattgacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actattatctagtggtgagcactgatcagtgtgtactccctttttatgatttccaaagcttatgcaaggctttattattgacataaatgaattatgacagCTGTTGGAGGTGATCTGCGACAATATTTGGATGGATTAGCAAATGCTGAAAATATGGTGAAGTATGTTGAGCAGCACCCATTTGGTCAAGAAGCTATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - agtggtg
- - - - - - - - - - - - - cagtgtg
- - - - - - - - - - - - - - - - -tactccc
- - - - - - - - - - - - - - - - - - - - - - - - - - ccaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaagg