1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...actgttttaaattttcttatggtgaagtttcttgctactatctctgtatgctgtttatttttagaaaactcgaatatttgattttggtgtttgcctcaggTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGG
species | Glycine max |
transcript | GLYMA18G48370.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGCCAATTGTCCCATTG TAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTEST: gi|208272394|gb|GE073208.1|GE073208
genomic: GAGAAGCCAATTGTCCCATTGtaagtaaatc ... ttgcctcaggTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGG
EST: TGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTG TAGCTGATATAACTCACTCACTAEST: gi|192294788|gb|FG987477.1|FG987477
genomic: TGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGtaagtaaatc ... ttgcctcaggTAGCTGATATAACTCACTCACTA
EST: TGTTGATCCACGTAACTTGGAGTGGATGGGAGAAGCCAATTGTCCCATTG TAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTEST: gi|193608170|gb|FK557083.1|FK557083
genomic: TGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGtaagtaaatc ... ttgcctcaggTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGG
EST: TGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTG TAGCTGATATAACTC
genomic: TGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGtaagtaaatc ... ttgcctcaggTAGCTGATATAACTC
gtatgctgtttatttttagaaaactcgaatatttgattttggtgtttgcctcaggTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGG
atttgat putative branch site (score: 5)
tttgcctc putative PPT
tgtttatttttagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgttttaaattttcttatggtgaagtttcttgctactatctctgtatgctgtttatttttagaaaactcgaatatttgattttggtgtttgcctcaggTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - -tatggtg
- - - - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttggtg