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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tatgatcttttagcctatgaatgtacagcttttagtttgtgactgatcccatgttattaaatataggaaggcattttattcttgatattatcatcttggtgatgctgattagaatgaaagaatgcaggcttcttacttttcttttggtctattgtataatacagaATCATCTTGATAATATGCAACTGCCAGACACTATCCGGAGGCGTATCCAAGCAGCAATGCCTCTGCTCCCTCCCTCTATACGGTGCTCTTTCTCATGCCA

Basic information

species Glycine max
transcript GLYMA18G46700.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7146255|gb|AW508118.1|AW508118
EST:     GGAATTTTCTGGATTTGAACGTGAGCCATTGGAGGCATTGCAGA                         ATCATCTTGATAATATGCAACTGCCAGACACTATCCGGAGGCGTATCCAAG
genomic: GGAATTTTCTGGATTTGAACGTGAGCCATTGGAGGCATTGCAGGtatgatcttt ... ataatacagaATCATCTTGATAATATGCAACTGCCAGACACTATCCGGAGGCGTATCCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatgaaagaatgcaggcttcttacttttcttttggtctattgtataatacagaATCATCTTGATAATATGCAACTGCCAGACACTATCCGGAGGCGTATCCAAGCAGCAATGCCTCTGCTCCCTCCCTCTATACGGTGCTCTTTCTCATGCCA
                   ttcttac  putative branch site (score: 2)
                                     tctattgtataata  TA-rich tract