1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
tgaacaccccttttccagtttatatttcattgatttaatgtctatttgtcaatagttaatcaatatgttctttatttgtcaggGTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTCATGCCCTTGATTTTCTGCGTGAAGATTGCGTTCATGTGTCTG
species | Glycine max |
transcript | GLYMA18G46440.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGG GTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTCEST: gi|208129458|gb|GD930998.1|GD930998
genomic: CAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacacccc ... atttgtcaggGTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTC
EST: CAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGG GTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTC
genomic: CAAATTGGTGCACGGTGATCTCAGTGAATATAATATACTTTATTTTGAGGtgaacacccc ... atttgtcaggGTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTC
attgatttaatgtctatttgtcaatagttaatcaatatgttctttatttgtcaggGTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTCATGCCCTTGATTTTCTGCGTGAAGATTGCGTTCATGTGTCTG
agttaat putative branch site (score: 4)
ttctttattt putative PPT
aatagttaatcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaacaccccttttccagtttatatttcattgatttaatgtctatttgtcaatagttaatcaatatgttctttatttgtcaggGTCACTTGTACATTATTGATGTTTCTCAAGCTGTTGATCCTGAACATCCTCATGCCCTTGATTTTCTGCGTGAAGATTGCGTTCATGTGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA