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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taagtgatctgatatttaattgtgcctgtaagatcttgattgtggcattttgatttaatgcacttgagaacggataaattataaattatcaatttacaactcattttcatatttgtgtaggTTGATGCAGCTGTTGTCTCATTCAAGCTGAAGCTACCCTCAGAATACCCCCAAGTTTCTTCCACTAAAAGCTTCTTCTCAATGG

Basic information

species Glycine max
transcript GLYMA18G46220.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46220.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv15s0048g01790.t01 (Vitis vinifera), 3'ss of exon 7
taagtgatctgatatttaattgtgcctgtaagatcttgattgtggcattttgatttaatgcacttgagaacggataaattataaattatcaatttacaactcattttcatatttgtgtaggTTGATGCAGCTGTTGTCTCATTCAAGCTGAAGCTACCCTCAGAATACCCCCAAGTTTCTTCCACTAAAAGCTTCTTCTCAATGG
  | |    ||  ||  |  |    ||  ||||     | | |     |||  |  ||||| |    ||| ||| |     |  |           | | || |||  ||  || ||||||||||||||||||||||   |||||||||||||| | |    || || || |  ||||| |||| |||||| ||||||||| || 
--actagaatggcatccatgttctactcaaagac---aaatataaagctttcttccaatgctcaaaggaatggaga-----tgga----------gctaatcctttatatgcttctgtagGTTGATGCAGCTGTTGTTGTATTCAAGCTGAAGCAAGCGGTGGACTATCCACCGGTTTCCTCCATTAAAAGTTTCTTCTCACTG-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaacggataaattataaattatcaatttacaactcattttcatatttgtgtaggTTGATGCAGCTGTTGTCTCATTCAAGCTGAAGCTACCCTCAGAATACCCCCAAGTTTCTTCCACTAAAAGCTTCTTCTCAATGG
       ataaattataaattat  TA-rich tract