1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cacacttgatcattggaaggtcgtgatttttttctttagctgtaaattttcttaggagtaccagtttcactgacaagaatttctggattgtgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAAATGGTTCCCATGAGGTGTCATTGTTGTCAAATAATTATATGAATTGGT
species | Glycine max |
transcript | GLYMA18G46140.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCGTGACTGGNGCATTTGGATTTGTTTCGTCTATAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTGCAAAACEST: gi|14009204|gb|BG725808.1|BG725808
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAAC
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|14992012|gb|BI317685.1|BI317685
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAEST: gi|192295382|gb|FG986996.1|FG986996
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|58019988|gb|CX706730.1|CX706730
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|22523238|gb|BU082049.1|BU082049
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|20448328|gb|BQ252452.1|BQ252452
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|58017723|gb|CX704465.1|CX704465
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|23052758|gb|BU577249.1|BU577249
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAEST: gi|213594875|gb|DB977217.1|DB977217
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|17400319|gb|BM177101.1|BM177101
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|58023442|gb|CX710183.1|CX710183
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|22523317|gb|BU082128.1|BU082128
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|7926211|gb|AW832237.1|AW832237
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCEST: gi|58023678|gb|CX710419.1|CX710419
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTC
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|58014395|gb|CX701137.1|CX701137
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|7693120|gb|AW761217.1|AW761217
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGEST: gi|151412092|gb|EV281904.1|EV281904
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAG
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGA-TAAEST: gi|21602594|gb|BQ612925.1|BQ612925
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: CTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|58023559|gb|CX710300.1|CX710300
genomic: CTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|192332475|gb|FK024236.1|FK024236
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAEST: gi|16348826|gb|BI974421.1|BI974421
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAEST: gi|7925277|gb|AW831303.1|AW831303
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGEST: gi|7693089|gb|AW761187.1|AW761187
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTG
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAEST: gi|15661823|gb|BI699194.1|BI699194
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAA
EST: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAG TTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
genomic: GCGTGACTGGGGCATTTGGATTTGTTTCGTCTCTAATATCTTGTTATCAGgtaccagcta ... tgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAA
attttcttaggagtaccagtttcactgacaagaatttctggattgtgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAAATGGTTCCCATGAGGTGTCATTGTTGTCAAATAATTATATGAATTGGT
cactgac putative branch site (score: 2)
aagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacttgatcattggaaggtcgtgatttttttctttagctgtaaattttcttaggagtaccagtttcactgacaagaatttctggattgtgcaatgcagTTGCTTCCTGCCCCAGCCAAGTCCAAAACTTTGTGAAGTGTGGAAGAATAAAATGGTTCCCATGAGGTGTCATTGTTGTCAAATAATTATATGAATTGGT
- cacttga
- - - - - - -tggaagg
- - - - - - - - - - - - - - - - - - -agctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgg