1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttcttggtgttgtgtttggaggtactcagtgtgattagtagtgtgtctgaagtttatcttgttagttctgatttcttggaatatttgctattaatggcaGATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGGAACACCGGCTTGAATTGATTGAACTGTAAATATGAAGACAAGAGATATC
species | Glycine max |
transcript | GLYMA18G44460.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAAT GATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGGEST: gi|31467402|gb|CD409430.1|CD409430
genomic: CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaag ... attaatggcaGATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG
EST: CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAAT GATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGGEST: gi|9440109|gb|BE440620.1|BE440620
genomic: CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaag ... attaatggcaGATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG
EST: CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAAT GATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG
genomic: CTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATggtatggaag ... attaatggcaGATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGG
gtctgaagtttatcttgttagttctgatttcttggaatatttgctattaatggcaGATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGGAACACCGGCTTGAATTGATTGAACTGTAAATATGAAGACAAGAGATATC
tattaat putative branch site (score: 2)
aatatttgctattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttggtgttgtgtttggaggtactcagtgtgattagtagtgtgtctgaagtttatcttgttagttctgatttcttggaatatttgctattaatggcaGATTACTGTCAAGAGAGCAGGAGCAAGGTTTCCTGGTAGAGAAGATTGCGGAACACCGGCTTGAATTGATTGAACTGTAAATATGAAGACAAGAGATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - ggtgttg
- - - - - - - - ttggagg
- - - - - - - - - - - - - -cagtgtg
- - - - - - - - - - - - - - - - - - - - - -gtgtctg