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ggtagtttttcttaaaatctcctgatttttttctttatattttctgtttgtcttgcctatgatgatcatttgactaagttctacatttctgtctaGTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACATTAGCTTGCCAT
species | Glycine max |
transcript | GLYMA18G43310.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGTTGGCGGAGCCCTACTGGCTTATATGTATTCTGCACCTCCATTTAA- GTTAAAACGAAGTGGATGGATTGGAEST: gi|16276277|gb|BI941773.1|BI941773
genomic: CGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCC-TTTAAAggtagttttt ... tttctgtctaGTTAAAACAAAATGGATGGATTGGA
EST: GCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAA GTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACATEST: gi|16349016|gb|BI974611.1|BI974611
genomic: GCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAAggtagttttt ... tttctgtctaGTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACAT
EST: GCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAA GTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACAT
genomic: GCGGTGGGCGGAGCCCTACTGTCTTATATATATTCTGCACCTCCTTTAAAggtagttttt ... tttctgtctaGTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACAT
tttctgtttgtcttgcctatgatgatcatttgactaagttctacatttctgtctaGTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACATTAGCTTGCCAT
atttgac putative branch site (score: 4)
tttctgtct putative PPT
atcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtagtttttcttaaaatctcctgatttttttctttatattttctgtttgtcttgcctatgatgatcatttgactaagttctacatttctgtctaGTTAAAACAAAATGGATGGATTGGAAACTTTGCCCTTGGAGCAAGTTACATTAGCTTGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG