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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctataatgtatgatgtataaatgtataatgaataatgttgctttgaactgttgtacatagttttacaaagattgcttactttaacaggtgttatgcttcttatctaacctaaaatttgaaaattgtaacagGTTGATTGTTTCAGTGGCATGGGTCGCTCATATTATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATTAAGCTAGAT

Basic information

species Glycine max
transcript GLYMA18G43020.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43020.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G012284_T01 (Zea mays), 3'ss of exon 6
gtaagctataatgtatgatgtataaatgtataatgaataatgttgctttgaactgttgtacatagttttacaaagattgcttactttaacaggtgttatgcttcttatctaacctaaaatttgaaaattgtaacagGTTGATTGTTTCAGTGGCATGGGTCGCTCATATTATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATTAAGCTAGAT
                                 ||  |       |||||   || ||||| |   ||        || |||| |  |    ||  | | |   ||         ||||  |     |  |  |||||| ||||||||| | || ||||| || |||||| | || ||| | || ||||||||||| || ||| ||||| |||||||||| ||||| ||| | |||
--------------------------------gtgggtgcaaaacctttg---tgctgtacttgtctt-------gtttcttaatcaagt--gtactttcccaattgatctgttcaaaacattgttgtgcttgcagGTTAATTGTTTCAATAGCTTGGGTTGCACATATTGTCATATACTTGTTGATTGATCCTCCTCTATCTTCTTTCCTGAATGAAGTCTTCATAAAGTTGGAT

upper sequence: GLYMA18G43020.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 8
gtaagctataatgtatgatgtataaatgtataatgaataatgttgctttgaactgttgtacatagttttacaaagattgcttactttaacaggtgttatgcttcttatctaacctaaaatttgaaaattgtaacagGTTGATTGTTTCAGTGGCATGGGTCGCTCATATTATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATTAAGCTAGAT
                           |   |   | || | ||| | ||   | |  | | ||  ||||| | |  |   | || | | |||   | | |   ||   |  |      ||||     | ||  |||||||||||||||||||| ||| | ||||||||  | || ||  |  | ||||||||||| || ||||||||||| ||||| |||||||| |||||||||
---------------------------gctcacctactagt-ttggtgtggtttttacttctta--tttactatgtgtctattctctga-aggacctttacaagttgcatttctctttgtttg-----tttattagGTTGATTGTTTCAGTGGCTTGGATTGCTCATATCGTCATATATTTGCTGATTGATCCTCCTCTGTCTCCTTTCTTAAATGAGGTTTTCATCAAGCTAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6914596|gb|AW396126.1|AW396126
EST:     GCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGG                         GTTGATTGTTTCAGTGGCATGGGTCGCTCATATTATTATCTACCTATTAAT
genomic: GCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGGgtaagctata ... attgtaacagGTTGATTGTTTCAGTGGCATGGGTCGCTCATATTATTATCTACCTATTAAT
EST: gi|22522977|gb|BU081788.1|BU081788
EST:     GCTCTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGG                         GTTGATTGTTTCAGTGGCGTGGGTCACTCATATAATTATCTACCTATTAAT
genomic: GCACTAACAGTTCTTGGTTACCTGGCAAAATTTGTTTTGGGAATTTTAGGgtaagctata ... attgtaacagGTTGATTGTTTCAGTGGCATGGGTCGCTCATATTATTATCTACCTATTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttaacaggtgttatgcttcttatctaacctaaaatttgaaaattgtaacagGTTGATTGTTTCAGTGGCATGGGTCGCTCATATTATTATCTACCTATTAATTGATCCTCCACTTTCTCCTTTCTTGAATGAAGTTTTCATTAAGCTAGAT
                                 taaaatttgaaaattg  TA-rich tract