1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacattgctatattcaagctagttttttaaccccttatttatggtttcattgtaatagttaatattttaactaatgttttataaactcattcctcattcgaaaacaaggatcaatttcaaactcatcacaaaagattttactagctaaaaaccattaccttacacgttcaaatttggtgtcaatttttgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAACATTGTAGGATCTG
species | Glycine max |
transcript | GLYMA18G42940.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGGATGCCTTCTTGTCTGCTCATGAG GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTEST: gi|192330011|gb|FK020827.1|FK020827
genomic: GGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: GTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTEST: gi|51335245|gb|CO979111.1|CO979111
genomic: GTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: GTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTEST: gi|192330012|gb|FK020828.1|FK020828
genomic: GTACTGGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: TCTGCTCATGAG GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTEST: gi|208206230|gb|GE002063.1|GE002063
genomic: TCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: TACTGGAAACGTGGACGTTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTEST: gi|6964045|gb|AW432738.1|AW432738
genomic: TACTGGAAACGTGGACG-TTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: GACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTEST: gi|10253189|gb|BE820955.1|BE820955
genomic: GACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
EST: GGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAG GGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
genomic: GGAAACGTGGACGTTCTTAGGGATGCCTTCTTGTCTGCTCATGAGgtacattgct ... tgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTT
agctaaaaaccattaccttacacgttcaaatttggtgtcaatttttgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAACATTGTAGGATCTG
accttac putative branch site (score: 3)
tttttgt putative PPT
ttcaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattgctatattcaagctagttttttaaccccttatttatggtttcattgtaatagttaatattttaactaatgttttataaactcattcctcattcgaaaacaaggatcaatttcaaactcatcacaaaagattttactagctaaaaaccattaccttacacgttcaaatttggtgtcaatttttgtgacacagGGTTGGGGATTGACTGTAGTATTGGGAATTCATGCATCACCAACTTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAACATTGTAGGATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT