1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtggaccttttctcattttgtcatataatcaagttttggcaataatgtcatttcatcatgttcttaaacatttgtcatacagCAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAG
species | Glycine max |
transcript | GLYMA18G42540.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCCCATGAAATGCGATTAAGACTAAG CAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGTEST: gi|7924596|gb|AW830622.1|AW830622
genomic: CTCCCATGAAATGCGATTAAGACTAAGgtgtggacct ... tgtcatacagCAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGT
EST: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAG CAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGT
genomic: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtgtggacct ... tgtcatacagCAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGT
atcaagttttggcaataatgtcatttcatcatgttcttaaacatttgtcatacagCAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAG
ttaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggaccttttctcattttgtcatataatcaagttttggcaataatgtcatttcatcatgttcttaaacatttgtcatacagCAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG