1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttctgagattcaacctcacatattcctctttttgtttctttatatacttgcattattatatcaccaagtttgaattatgttttttaaaaatatacttttcttataactagacctgcaaaatttttggggcttgttgtcttattatgcctgcttctctgtatgtggaagatgttgatttcagtttatgatgttgcagGAATTATCAGAACATCTTGGAATCCGGCTGCTAAATGAGCGGTTAAATGATTCAATGATGCAAGAATCTTTTGAATCCATATTTCCAAAAGATAATCCAA
species | Glycine max |
transcript | GLYMA18G14770.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGACACAACTTCTTCTTCACGTATATTTATTAAGATTCTCTTCCAG GAATTATCAGAACATCTTGGAATCCGGCTGCTAAATGAGCGGTTAAATGATEST: gi|193495510|gb|FK462822.1|FK462822
genomic: AAGAGGACACAACTTCTTCTTCACGTATATTTATTAAGATTCTCTTCCAGgttctgagat ... gatgttgcagGAATTATCAGAACATCTTGGAATCCGGCTGCTAAATGAGCGGTTAAATGAT
EST: AAGAGGACACAACTTCTTCTTCACGTATATTTATTAAGATTCTCTTCCAG GAATTATCAGAACATCTTGGAATCCGGCTGCTAAATGAGCGGTTAAATGATEST: gi|22541703|gb|BU091546.1|BU091546
genomic: AAGAGGACACAACTTCTTCTTCACGTATATTTATTAAGATTCTCTTCCAGgttctgagat ... gatgttgcagGAATTATCAGAACATCTTGGAATCCGGCTGCTAAATGAGCGGTTAAATGAT
EST: AAGAGGACACAACTTCTTCTTCACGTATATGTATTAAGATTCTCTTCCAG GAATTATCAGAACATCTTGGAGTCCGGCTGCTATATGAGCGGTGTAA-TGA
genomic: AAGAGGACACAACTTCTTCTTCACGTATATTTATTAAGATTCTCTTCCAGgttctgagat ... gatgttgcagGAATTATCAGAACATCTTGGAATCCGGCTGCTAAATGAGCGGT-TAAATGA
ttatgcctgcttctctgtatgtggaagatgttgatttcagtttatgatgttgcagGAATTATCAGAACATCTTGGAATCCGGCTGCTAAATGAGCGGTTAAATGATTCAATGATGCAAGAATCTTTTGAATCCATATTTCCAAAAGATAATCCAA
tgttgat putative branch site (score: 4)
tttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgagattcaacctcacatattcctctttttgtttctttatatacttgcattattatatcaccaagtttgaattatgttttttaaaaatatacttttcttataactagacctgcaaaatttttggggcttgttgtcttattatgcctgcttctctgtatgtggaagatgttgatttcagtttatgatgttgcagGAATTATCAGAACATCTTGGAATCCGGCTGCTAAATGAGCGGTTAAATGATTCAATGATGCAAGAATCTTTTGAATCCATATTTCCAAAAGATAATCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA