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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaataactaaacatctatcctagttgtgtgatcaaatcaatatactaacaatttagtaaggactgtaattgatggatttcctgatgactgagctgttgtgattgcttttaagGTATACGTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTACTTATGACTTCCTCTACTTGCCAATTGACTTCAAG

Basic information

species Glycine max
transcript GLYMA18G12730.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172986|gb|HO019985.1|HO019985
EST:     TGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAA                         GTATACGTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTAC
genomic: TGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAgtaagaataa ... tgcttttaagGTATACGTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTAC
EST: gi|51336464|gb|CO980330.1|CO980330
EST:     TGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAA                         GTATACGTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTAC
genomic: TGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAgtaagaataa ... tgcttttaagGTATACGTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggactgtaattgatggatttcctgatgactgagctgttgtgattgcttttaagGTATACGTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTACTTATGACTTCCTCTACTTGCCAATTGACTTCAAG
                     tcctgat  putative branch site (score: 3)
                                            ttgctttt  putative PPT
        taattgat  TA-rich tract