1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aggtaaattacaattgtttcaaaattgttaaatggttttatcagaaataccattcccctagttttcaaccctgatatctgttcatataattttgttttcaGGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGCAACCTCCAACTTGATCTTTCATTACAACCAAGGGCCTTGCCGAGCTTGT
species | Glycine max |
transcript | GLYMA18G10960.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAAAAGATGAGTCTG AGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGCEST: gi|193380793|gb|FK346076.1|FK346076
genomic: AAAAAGATGAGTCTGagtaagtcca ... tttgttttcaGGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGC
EST: AAAAGATGAGTCTG AGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGC
genomic: AAAAGATGAGTCTGagtaagtcca ... tttgttttcaGGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGC
aataccattcccctagttttcaaccctgatatctgttcatataattttgttttcaGGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGCAACCTCCAACTTGATCTTTCATTACAACCAAGGGCCTTGCCGAGCTTGT
ccctgat putative branch site (score: 4)
ttttgttttc putative PPT
ttcatataattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtaaattacaattgtttcaaaattgttaaatggttttatcagaaataccattcccctagttttcaaccctgatatctgttcatataattttgttttcaGGTCTTCAGAGCCAACTGGATCTGGTGCATCTTTTAGACCAGGAACTTGGCAACCTCCAACTTGATCTTTCATTACAACCAAGGGCCTTGCCGAGCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - -gaaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accctga