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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatcaaaataactgaattttttttcttgtatagttggcttggttttactcacattgtcaaaacataataaaacattacaatttgtaatttttggatacagGTTGGACTTGATGCTGAATATTCCTATGCTAGGAGTTTGGCTCGTTTTGGTGCATCTCTAGGACCTATTGCTTGGAAAATTGCTTCCCACAGGATTCAAA

Basic information

species Glycine max
transcript GLYMA18G10850.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10850.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv19s0090g00610.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtatcaaaataactgaattttttttcttgtatagttggcttggttttactcacattgtcaaaacataataaaacattacaatttgtaatttttggatacagGTTGGACTTGATGCTGAATATTCCTATGCTAGGAGTTTGGCTCGTTTTGGTGCATCTCTAGGACCTATTGCTTGGAAAATTGCTTCCCACAGGATTCAAA
||||||| | || ||| |  |  | |   |||| ||  |  || |  || ||||||                          || ||| |  ||||  ||  |||||||| ||| |||| ||  |||| |||||||||||  | |||||||||| |||  |||| |||||| ||||||||||| |||| ||||| |||||| |  
gtatgtagccaa-taaatttacatctccccttgaatgctctgcat--ttgtactcat-------------------------cagtttct--ttttctgaatcagGTTGGGCTTCATGCAGATCATTCTTATGCTAGGAGCCTAGCTCGTTTTGCTGCTACTCTTGGACCTGTTGCTTGGAAAGTTGCCTCCCAGAGGATTGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactcacattgtcaaaacataataaaacattacaatttgtaatttttggatacagGTTGGACTTGATGCTGAATATTCCTATGCTAGGAGTTTGGCTCGTTTTGGTGCATCTCTAGGACCTATTGCTTGGAAAATTGCTTCCCACAGGATTCAAA
 tactcac  putative branch site (score: 1)
                                          ttttt  putative PPT
           tcaaaacataataaaa  TA-rich tract