1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cccgtaaaattgaccttgtaaattacaaaagatacttttgctttcttactatatgaaactgcttgtcaatattaaaagtgttacttattcatgtgacaggCAAAGAGAGCTGTAAGAGGATAATTCTTGTTTCTATTCATGATTAAGATTCACCAAGCAGATATAGTGTTCTTTCTCCGGTGATTGCTATCAGATGAACA
species | Glycine max |
transcript | GLYMA18G07540.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGTCGAGTGGGAATCTGGAATGTAATTTTGTTTCTTACCCTTGAACAAG CAAAGAGAGCTGTAAGAGGATAATTCTTGTTTCTATTCATGATTAAGEST: gi|6482105|gb|AW201376.1|AW201376
genomic: TGGTCGAGTGGGAATCTGGAATGTAATTTTGTTTCTTACCCTTGAACAAGtaagatatac ... atgtgacaggCAAAGAGAGCTGTAAGAGGATAATTCTTGTTTCTATTCATGATTAAG
EST: TGGTCGAGTGGGAATCTGGAATGTAATTTTGTTTCTTACCCTTGAACAAG CAAAGAGAGCTGTAAGAGGATAATTCTTGTTTCTATTCATGATTAAGATTCEST: gi|22928550|gb|BU545689.1|BU545689
genomic: TGGTCGAGTGGGAATCTGGAATGTAATTTTGTTTCTTACCCTTGAACAAGtaagatatac ... atgtgacaggCAAAGAGAGCTGTAAGAGGATAATTCTTGTTTCTATTCATGATTAAGATTC
EST: TGGTCGAGTGGGAATCTGGAATGTAATTTTGTTTCTTACCCTTGAACAAG CAAAGAGAGCTGTAAGAGGATAATTCTTGTTTCTATTCATGATTAAGATTC
genomic: TGGTCGAGTGGGAATCTGGAATGTAATTTTGTTTCTTACCCTTGAACAAGtaagatatac ... atgtgacaggCAAAGAGAGCTGTAAGAGGATAATTCTTGTTTCTATTCATGATTAAGATTC
ttactatatgaaactgcttgtcaatattaaaagtgttacttattcatgtgacaggCAAAGAGAGCTGTAAGAGGATAATTCTTGTTTCTATTCATGATTAAGATTCACCAAGCAGATATAGTGTTCTTTCTCCGGTGATTGCTATCAGATGAACA
ttcttac putative branch site (score: 2)
aatattaaaagtgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccgtaaaattgaccttgtaaattacaaaagatacttttgctttcttactatatgaaactgcttgtcaatattaaaagtgttacttattcatgtgacaggCAAAGAGAGCTGTAAGAGGATAATTCTTGTTTCTATTCATGATTAAGATTCACCAAGCAGATATAGTGTTCTTTCTCCGGTGATTGCTATCAGATGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - -ccttgta
- - - - - - - - - - - - - aaaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt