1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaatgcataagttgtacgccttaaatataaggtattaatggaaaagccacatatgttttatttctggcctaacagcatattatttatccttgttttcaggTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGG
species | Glycine max |
transcript | GLYMA18G04910.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGGTATCTGTGTCACACCGTAATGCGCAGATG TACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGGEST: gi|120532159|gb|EH260292.1|EH260292
genomic: ATGGTATCTGTGTCACACCGTAATGCGCAGATGtaagattctc ... tgttttcaggTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGG
EST: TGATTGATTTTCCACAAATGGTATCTGTGTCACACCGTAATGCGCAGATG TACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGG
genomic: TGATTGATTTTCCACAAATGGTATCTGTGTCACACCGTAATGCGCAGATGtaagattctc ... tgttttcaggTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGG
gccacatatgttttatttctggcctaacagcatattatttatccttgttttcaggTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGG
gcctaac putative branch site (score: 2)
tttatccttgttttc putative PPT
atatgttttatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgcataagttgtacgccttaaatataaggtattaatggaaaagccacatatgttttatttctggcctaacagcatattatttatccttgttttcaggTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGG
- -tgcataa
- - - - - - tgtacgc
- - - - - - - - - - - aaatataa
- - - - - - - - - - - - - - - - - - - - - - -gccacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctaaca