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...atttccattataggatcaaaatggtccttcgatgtcatatttaagtgtcgattagggtctgttactctcaatcatttagctgatgtatatgctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGG
species | Glycine max |
transcript | GLYMA18G04360.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG TCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCEST: gi|208190028|gb|GD991796.1|GD991796
genomic: ACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGtttgctttta ... gctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
EST: AGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG TCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCEST: gi|207686936|gb|GD670464.1|GD670464
genomic: AGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGtttgctttta ... gctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
EST: GGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG TCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCEST: gi|208227860|gb|GE025940.1|GE025940
genomic: GGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGtttgctttta ... gctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
EST: GGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG TCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCEST: gi|193510785|gb|FK471259.1|FK471259
genomic: GGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGtttgctttta ... gctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
EST: GCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGACCTTCAAAGG TCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCEST: gi|193616966|gb|FK571636.1|FK571636
genomic: GCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGtttgctttta ... gctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
EST: GGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG TCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCEST: gi|208102897|gb|GD900887.1|GD900887
genomic: GGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGtttgctttta ... gctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
EST: GGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG TCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCEST: gi|22541669|gb|BU091512.1|BU091512
genomic: GGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGtttgctttta ... gctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
EST: ACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG TCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCEST: gi|192332258|gb|FK023907.1|FK023907
genomic: ACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGtttgctttta ... gctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
EST: ACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGG TCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
genomic: ACATGGCCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGtttgctttta ... gctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTC
tgtcgattagggtctgttactctcaatcatttagctgatgtatatgctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGG
agctgat putative branch site (score: 4)
tgctcttc putative PPT
aatcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttccattataggatcaaaatggtccttcgatgtcatatttaagtgtcgattagggtctgttactctcaatcatttagctgatgtatatgctcttcaggTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - gggtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg