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...acatgattaccttttccttactgtcaaattgtaaattttgttttatgagctgttagtgtggtgttatatttacatactctattcctttacatttgtggcaGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGATGACCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGACGTA
species | Glycine max |
transcript | GLYMA18G04160.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGGGGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGA GAAGAAGCAAGATAATTCATATGCTGEST: gi|17964019|gb|BM270761.1|BM270761
genomic: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGAggtattttca ... atttgtggcaGAAGAAGCAAGATAATTCAAATGCTG
EST: GCATCATCTTCCACTCCTGCTGA GAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGAEST: gi|208293168|gb|GE096404.1|GE096404
genomic: GCATCATCTTCCACTCCTGCTGAggtattttca ... atttgtggcaGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGA
EST: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGA GAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCAEST: gi|192309271|gb|FG999470.1|FG999470
genomic: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGAggtattttca ... atttgtggcaGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCA
EST: GTGGTGGTTCCTCAATGCAACAAGCATCATTTTCCACTCCTGCTGA GAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGAEST: gi|11411468|gb|BF423479.1|BF423479
genomic: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGAggtattttca ... atttgtggcaGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGA
EST: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCGCTCCTGCTGA GAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGAEST: gi|151407599|gb|EV277414.1|EV277414
genomic: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGAggtattttca ... atttgtggcaGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGA
EST: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGA GAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGAEST: gi|58016501|gb|CX703243.1|CX703243
genomic: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGAggtattttca ... atttgtggcaGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGA
EST: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGA GAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGA
genomic: GTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGAggtattttca ... atttgtggcaGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGA
tgagctgttagtgtggtgttatatttacatactctattcctttacatttgtggcaGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGATGACCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGACGTA
tgttatatttacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgattaccttttccttactgtcaaattgtaaattttgttttatgagctgttagtgtggtgttatatttacatactctattcctttacatttgtggcaGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGATGACCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGACGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-catgatt
- - - - - - - - - tactgtc
- - - - - - - - - - - - - - - - - - - - - - - - gctgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtg