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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcatgcattgctaaatgattttattgcttgattgtattcgtcattgtatttttttcagccttctgaggtcactatgttgtggtggttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG

Basic information

species Glycine max
transcript GLYMA18G02210.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193523759|gb|FK477864.1|FK477864
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|207774146|gb|GD743268.1|GD743268
EST:     TCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTTAGCTATCTGACC
genomic: TCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|208322814|gb|GE123905.1|GE123905
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|208304649|gb|GE106074.1|GE106074
EST:     TCCTTCTTGCTGAGCTGAACACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|17021583|gb|BM092617.1|BM092617
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|9900642|gb|BE609610.1|BE609610
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|193529719|gb|FK483986.1|FK483986
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|7327134|gb|AW620996.1|AW620996
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|193431271|gb|FK394637.1|FK394637
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCACTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|208231045|gb|GE033444.1|GE033444
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|208287344|gb|GE085708.1|GE085708
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCA
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCA
EST: gi|6200949|gb|AW153049.1|AW153049
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|193430848|gb|FK393682.1|FK393682
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|5753617|gb|AI960904.1|AI960904
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|6070479|gb|AW099866.1|AW099866
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|6725970|gb|AW310369.1|AW310369
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|207779965|gb|GD753986.1|GD753986
EST:     TCTTGCTGAGCTGAGCACTAGTAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTACCACTCATTCCACCCAGTTGCTACCATTCTTAGCTATCTGAC
genomic: TCTTGCTGAGCTGAGCACTAG-AATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATT-CCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGAC
EST: gi|193557316|gb|FK514387.1|FK514387
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCGGTTTAAAGCTGAAAGTGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|208110981|gb|GD908741.1|GD908741
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|208338689|gb|GE134867.1|GE134867
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|208315496|gb|GE116190.1|GE116190
EST:     GCTGAAAATGAG                         GGTAAAATTCCTACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGA
genomic: GCTGAAAATGAGgtctgcatgc ... gttgatgcagGG-AAAATTCC-ACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGA
EST: gi|208298017|gb|GE092364.1|GE092364
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|22931962|gb|BU549101.1|BU549101
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|4299061|gb|AI442850.1|AI442850
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|209697827|gb|BW670083.1|BW670083
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|213592630|gb|DB979421.1|DB979421
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
EST: gi|207703735|gb|GD686299.1|GD686299
EST:     TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC
genomic: TCCTTCTTGCTGAGCTGAGCACTAGAATCCAGTTTAAAGCTGAAAATGAGgtctgcatgc ... gttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcattgtatttttttcagccttctgaggtcactatgttgtggtggttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG
                                            ggttgat  putative branch site (score: 5)
     tgtattttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgcatgcattgctaaatgattttattgcttgattgtattcgtcattgtatttttttcagccttctgaggtcactatgttgtggtggttgatgcagGGAAAATTCCACTCATTCCACCCAGTTGCTACCATTCTCAGCTATCTGACCAAGGCTCCTCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC