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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctaataaagtacattttctccccaaaatatagtttttctcttattgtaacccttgatgttatactgtctctcagctgtttaaattggcttgaacagGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGT

Basic information

species Glycine max
transcript GLYMA17G37870.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37870.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM5G844195_T02 (Zea mays), 3'ss of exon 8
gtctaataaagtacattttctccccaaaatatagtttttctcttattgtaac-ccttgatgttatactgtctctcagctgtttaaattggcttgaacagGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGT
               ||| |   |  || ||| | | ||   | ||| | |  |||||||   ||| ||   || |  | ||  |||  || |   ||||| || |||||||| ||||| ||||| ||||| || || ||||| ||||||||||| || ||||| || || |||||||| || ||| | || || || |
--------------gtttgcagtctgaagtattgatgttaa-tgattatgataccttgat--catattggaacttaagtatt--aat--gcattggcagGTGGTTAATTGTAAGGATGACCTTGCACAATTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGACGAATACCATTTACAAACATTGGAAACGTTAT

upper sequence: GLYMA17G37870.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM5G825524_T01 (Zea mays), 3'ss of exon 7
gtctaataaagtacattttctccccaaaatatagttt-ttctcttattgtaacccttgatgttatactgtctctcagctgtttaaattggcttgaacagGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGT
               ||| |   |  || ||| | |  || |  |||  |||    |    || || ||   || |  | || |   ||  |||  ||||| || |||||||| ||||| ||||| || || || || ||||| ||||||||||| || ||||| ||||| |||||||| || ||| | || || || |
--------------gtttgcagtctgaagtattgatgattatgatatattaaattattg-attgtattggaacttaagtattaa---tgtattgg-cagGTGGTTAATTGTAAGGATGACCTTGCACAGTTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGATGAATACCATTTACAAACATTGGAAACATTAT

upper sequence: GLYMA17G37870.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G75850.1 (Arabidopsis thaliana), 3'ss of exon 7
gtctaataaagtacattttctccccaaaatatagtttttctcttattgtaacccttgatgttatactgtctctcagctgtttaaattggcttgaacagGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGT
||     |    |  ||| |  |    |  ||    |||||  ||  ||  |  || ||||   |   |||   |  | |  |||    ||||||||||| ||||| ||||||||| || | || || | |||||| |||||||||||||| || || ||||| |||||||||||||||||||| |||||||| || |
gttcggcagctcatttttgcatctattaccatgtcctttcttatagggtttcaattcatgt---ataatctgctaaatctgaaaac---cttgaacagGTCGTCAACTGTAAAGATAAGTTGGCTCAGTATTATCTGATGGAGTGCATAATTCAAGTCTTTCCTGATGAGTACCATTTGCAGACTCTTGAGACCTTAT

upper sequence: GLYMA17G37870.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 3'ss of exon 7
gtctaataaagtacattttctccccaaaatatagtttttctcttattgtaacccttgatgttat---actgtctctcagct----gtttaaattggcttgaacagGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGT
||||| |||       ||    | ||  || |  || |  | |    |  ||| ||  || |     ||  ||| |    |     || ||||    ||| |||||| ||||| ||||||||||||||||| |||| |||| | ||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||
gtctactaat-----cttctctctcagcatttctttctgatttagaagccaccattactgctggctaaccatctgtagaatctgcattgaaatctctttgcacagGTGGTCAACTGTAAAGATGAGCTTGCACAATATTATTTGATGGATTGCATAATTCAGGTATTTCCTGATGAGTACCACTTGCAGACACTTGAGACGTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgtaacccttgatgttatactgtctctcagctgtttaaattggcttgaacagGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGT
                                  tgtttaaatt  TA-rich tract