1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctttattagttttctgttatttcattagttgcagtaagttctagtactttgactggcctcttgtgtgcctgttacttattatctacatctatttttccagGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCATTAGAAG
species | Glycine max |
transcript | GLYMA17G37310.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCATGTTCATTTTTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTG GTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCATEST: gi|51337235|gb|CO981101.1|CO981101
genomic: GCATGTTCATTTTTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGgtaatgtgat ... atttttccagGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCAT
EST: GCATGTTCATTTTTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTG GTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCAT
genomic: GCATGTTCATTTTTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGgtaatgtgat ... atttttccagGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCAT
actttgactggcctcttgtgtgcctgttacttattatctacatctatttttccagGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCATTAGAAG
ctttgac putative branch site (score: 4)
tctatttttcc putative PPT
ttattatctacatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttattagttttctgttatttcattagttgcagtaagttctagtactttgactggcctcttgtgtgcctgttacttattatctacatctatttttccagGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTAGACGTTAGAAAAGCATTAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - -ttctgtt
- - - - - - - - - - - - - -gttgcag
- - - - - - - - - - - - - - - - - - - - - - - - ttgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcctg