1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ggtaaactttatgaattggtattcttgagtgtcgtccaatatgtgttgacagtttctaaaagtgaatttgttttgttgaatataGGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCGAGGCTTTGATACTGATATTTCTGTTGAAGTGAATGAAATTAA
species | Glycine max |
transcript | GLYMA17G36950.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACAATATTGATACCTGCCCTGTTTTTCATTCCCGAGTCTCCTAGATGGCT GGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCGEST: gi|208321476|gb|GE118199.1|GE118199
genomic: ACAATATTGATACCTGCCCTGTTTTTCATTCCCGAGTCTCCTAGATGGCTggtaaacttt ... gttgaatataGGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCG
EST: ACAATATTGATACCTGCCCTGTTTTTCATTCCCGAGTCTCCTAGATGGCT GGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCGEST: gi|19268732|gb|BM884988.1|BM884988
genomic: ACAATATTGATACCTGCCCTGTTTTTCATTCCCGAGTCTCCTAGATGGCTggtaaacttt ... gttgaatataGGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCG
EST: ACAATATTGATACCTGCCCTGTTTTTCATTCCCGAGTCTCCTAGATGGCT GGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCGEST: gi|4283382|gb|AI440649.1|AI440649
genomic: ACAATATTGATACCTGCCCTGTTTTTCATTCCCGAGTCTCCTAGATGGCTggtaaacttt ... gttgaatataGGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCG
EST: ACAATATTGATACCTGCCCTGTTTTTCATTCCCGAGTCTCCTAGATGGCT GGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCG
genomic: ACAATATTGATACCTGCCCTGTTTTTCATTCCCGAGTCTCCTAGATGGCTggtaaacttt ... gttgaatataGGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCG
tgtcgtccaatatgtgttgacagtttctaaaagtgaatttgttttgttgaatataGGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCGAGGCTTTGATACTGATATTTCTGTTGAAGTGAATGAAATTAA
ttctaaa putative branch site (score: 2)
ttttgtt putative PPT
ttttgttgaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaaactttatgaattggtattcttgagtgtcgtccaatatgtgttgacagtttctaaaagtgaatttgttttgttgaatataGGCAAAAATGGGAATGACAGAAGAATTTGAAACTTCCTTGCAAGTGCTCCGAGGCTTTGATACTGATATTTCTGTTGAAGTGAATGAAATTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG