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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttcctgttttatgttcagttttgatgacactccaacatatttttttttggttagatgatagcatttctttagaaccaataattagcaatttttggtacattgcatttaaacttgatcagTTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCGTACAGACCGACTACACGCTGCGATGTGACCGCAATTCTCGTTTTATATG

Basic information

species Glycine max
transcript GLYMA17G36620.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58025122|gb|CX711863.1|CX711863
EST:     ATCACATGCCGGAAACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACT                         TTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCG
genomic: ATCACATGCCGGAAACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCG
EST: gi|208239934|gb|GE042702.1|GE042702
EST:     ATCACATGCCGGAAACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACT                         TTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCG
genomic: ATCACATGCCGGAAACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCG
EST: gi|193391644|gb|FK356501.1|FK356501
EST:     AACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACT                         TTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCG
genomic: AACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCG
EST: gi|208219576|gb|GE020618.1|GE020618
EST:     ATCACATGCCGGAAACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACT                         TTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCG
genomic: ATCACATGCCGGAAACCAGAGGACTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttagaaccaataattagcaatttttggtacattgcatttaaacttgatcagTTCTCGAGACGACCTAGACTTGGGACAGCAATGGACATGAGAGCGCAGCCGTACAGACCGACTACACGCTGCGATGTGACCGCAATTCTCGTTTTATATG
            aataattagcaatttt  TA-rich tract