1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaatacgttacataaaaattaaacccaaaattaatctttgatatttattatctgtagactaaggtttaaacattcattttttggttctattggaaacagGTTTTTGCAGGATTTACACTAGCAAACCTTTCGGGTAAGATTTCAAGAAGTGATACAGAGTTAAGTACGTGACGTTTTGAGAAGCAGGGGTCTTGTGTAT
species | Glycine max |
transcript | GLYMA17G33790.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTATACATGGTCGCAAGTACTCTGCAATGTACATCCTTGGATGCATTCAG GTTTTTGCAGGATTTACACTAGCAAACCTTTCGGGTAAGATTTCAAGAAGTEST: gi|10255965|gb|BE823731.1|BE823731
genomic: TTATACATGGTCGCAAGTACTCTGCAATGTACATCCTTGGATGCATTCAGgtttgatttc ... ttggaaacagGTTTTTGCAGGATTTACACTAGCAAACCTTTCGGGTAAGATTTCAAGAAGT
EST: TTATACATGGTCGCAAGTACTCTGCAATGTACATCCTTGGATGCATTCAG GTTTTTGCAGGATTTACACTAGCAAACCTTTCGGGTAAGATTTCAAGAAGT
genomic: TTATACATGGTCGCAAGTACTCTGCAATGTACATCCTTGGATGCATTCAGgtttgatttc ... ttggaaacagGTTTTTGCAGGATTTACACTAGCAAACCTTTCGGGTAAGATTTCAAGAAGT
ttattatctgtagactaaggtttaaacattcattttttggttctattggaaacagGTTTTTGCAGGATTTACACTAGCAAACCTTTCGGGTAAGATTTCAAGAAGTGATACAGAGTTAAGTACGTGACGTTTTGAGAAGCAGGGGTCTTGTGTAT
ttctatt CT-rich tract
tttaaacattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatacgttacataaaaattaaacccaaaattaatctttgatatttattatctgtagactaaggtttaaacattcattttttggttctattggaaacagGTTTTTGCAGGATTTACACTAGCAAACCTTTCGGGTAAGATTTCAAGAAGTGATACAGAGTTAAGTACGTGACGTTTTGAGAAGCAGGGGTCTTGTGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - ataaaaa
- - - - - - - - - - - - cccaaaa