Sequence
atgc intronic sequence ATGC exonic sequence...tattacgaaatttaagaataaatataaaaccaagcagagtcataaatgtcatttagtaacatatttttccgtctaaacaagcaaatatgattcgtggcagGGTCTGAAGGATAGTGGAATTGGTTCTCAAGGGATCACCAACAGTATTAACATGATGACAAAGGTTAAGACTACAATAATCAACTTGCCAGCACCTTCTT
Basic information
species | Glycine max |
transcript | GLYMA17G33340.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G33340.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0008g05810.t01 (Vitis vinifera), 3'ss of exon 8
tattacgaaatttaagaataaatataaaaccaagcagagtcat-aaatgtcatttagtaacat-atttttccgtctaaacaagcaaatatgat-tcgtggcagGGTCTGAAGGATAGTGGAATTGGTTCTCAAGGGATCACCAACAGTATTAACATGATGACAAAGGTTAAGACTACAATAATCAACTTGCCAGCACCTTCTT
| | | | || || | | || ||| || | | || | ||| || |||||| | || || | || | ||||||| | ||||| |||||||||||||||||||| |||||||||||||| || |||||||| || |||| | | ||||| |||||| | || |||
---tgccattctgaacaaaacagtggaactcaatttttttcttcggaacccaaaacttcccatcgttgttccgtatcctgggattaacatcacctcattgcagGGTTTCAAGGACAGTGGAATTGGTTCTCAAGGAATCACCAACAGTATCAATATGATGACTAAAACAAAGAGCATGGTGATCAATTTGCCAACCCCGACTT
upper sequence: GLYMA17G33340.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S148_154V6.1 (Physcomitrella patens), 3'ss of exon 4
tattacgaaatttaagaataaatataaaaccaagcagagtcataaatgtcatt-tagtaacatatttttccgtctaaacaagcaaatatgat-tcgtggcagGGTCTGAAGGATAGTGGAATTGGTTCTCAAGGGATCACCAACAGTATTAACATGATGACAAAGGTTAAGACTACAATAATCAACTTGCCAGCACCTTCTT
| || |||||| ||||| | || || ||| || || | || | || | | | || | || || | | | ||||| ||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||| || || | || | |||||| | || | || |
-agtaggaaattgaagaagatgtagaatgtcaatgttggttgaaagcattgttgtggtggta-gtggtgatgtgtgtttgagtggtgttgttgttattacagGGGTTGAAGGATAGTGGTATTGGGTCTCAAGGCATCACCAACAGTATCAACATGATGACCAAAACCAAAAGCACTGTCATCAACCTCCCTGTTGAATCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtcatttagtaacatatttttccgtctaaacaagcaaatatgattcgtggcagGGTCTGAAGGATAGTGGAATTGGTTCTCAAGGGATCACCAACAGTATTAACATGATGACAAAGGTTAAGACTACAATAATCAACTTGCCAGCACCTTCTT
atttagtaacatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattacgaaatttaagaataaatataaaaccaagcagagtcataaatgtcatttagtaacatatttttccgtctaaacaagcaaatatgattcgtggcagGGTCTGAAGGATAGTGGAATTGGTTCTCAAGGGATCACCAACAGTATTAACATGATGACAAAGGTTAAGACTACAATAATCAACTTGCCAGCACCTTCTT
- - - - - - -aagaataa
- - - - - - - - - - - - - - -ccaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaagca