1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgattctagaaaaattaaatctaatccaaacacacactattaatctttatagagacctagaacctattttgcaacatgctgaactcctcattaattttagGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTTGTGGCACGTGGCATCGAGGTTCTTGTAGCTCAATCTTACAGTAAAAATC
species | Glycine max |
transcript | GLYMA17G33050.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAG GGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTTEST: gi|51336363|gb|CO980229.1|CO980229
genomic: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAGgtaccaatct ... ttaattttagGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTT
EST: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAG GGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTTEST: gi|120492269|gb|EH220436.1|EH220436
genomic: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAGgtaccaatct ... ttaattttagGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTT
EST: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAG GGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTTEST: gi|120491497|gb|EH219664.1|EH219664
genomic: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAGgtaccaatct ... ttaattttagGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTT
EST: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAG GGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTTEST: gi|120530683|gb|EH258816.1|EH258816
genomic: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAGgtaccaatct ... ttaattttagGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTT
EST: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAG GGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTT
genomic: ATTTAATTGAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAGgtaccaatct ... ttaattttagGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTT
tttatagagacctagaacctattttgcaacatgctgaactcctcattaattttagGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTTGTGGCACGTGGCATCGAGGTTCTTGTAGCTCAATCTTACAGTAAAAATC
cattaat putative branch site (score: 3)
ctcctcatt CT-rich tract
tcattaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattctagaaaaattaaatctaatccaaacacacactattaatctttatagagacctagaacctattttgcaacatgctgaactcctcattaattttagGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTTGTGGCACGTGGCATCGAGGTTCTTGTAGCTCAATCTTACAGTAAAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA