1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactgatattagttgatagccattagaatttggttttcctttttttgtttaaagtatttaatatctttcgtttaattgttcttgtttctctagtattaggaatttatatgattcattgtgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGTTGCCCGCTTTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAA
species | Glycine max |
transcript | GLYMA17G26900.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGA-TATCTCTAAGTG GAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGA-TGCAGCTGAAGEST: gi|151412705|gb|EV282517.1|EV282517
genomic: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTGgtactgatat ... tgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAG
EST: TCTTGGTCTCTTTCCCAATACTGCTGAAAGATTTGGAATATCTCTAAGTG GAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGEST: gi|151396592|gb|EV266469.1|EV266469
genomic: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTGgtactgatat ... tgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAG
EST: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTG GAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGA-GEST: gi|254342909|gb|GR859071.1|GR859071
genomic: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTGgtactgatat ... tgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAG
EST: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTG GAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGEST: gi|6719570|gb|AW307217.1|AW307217
genomic: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTGgtactgatat ... tgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAG
EST: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTG GAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGEST: gi|15203897|gb|BI426665.1|BI426665
genomic: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTGgtactgatat ... tgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAG
EST: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTG GAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGEST: gi|151402880|gb|EV272693.1|EV272693
genomic: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTGgtactgatat ... tgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAG
EST: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTG GAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGEST: gi|254342910|gb|GR859072.1|GR859072
genomic: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTGgtactgatat ... tgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAG
EST: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTG GAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAG
genomic: TCTTGGTCTCTTTCCCAATGCTGCTGAAAGATTTGGAATATCTCTAAGTGgtactgatat ... tgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAG
aattgttcttgtttctctagtattaggaatttatatgattcattgtgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGTTGCCCGCTTTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAA
gtttaat putative branch site (score: 4)
aatttatatgattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgatattagttgatagccattagaatttggttttcctttttttgtttaaagtatttaatatctttcgtttaattgttcttgtttctctagtattaggaatttatatgattcattgtgattgtcagGAAGCATGGGCCAGCTTCCAACATTTATCTTATTTGAGAATGCAGCTGAAGTTGCCCGCTTTCCTGAGTTGGATTTTGAAGCTGCATATTTTCACCCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC