Sequence
atgc intronic sequence ATGC exonic sequencegtatattcttactctacattaccctgtaatgtccatctcacacattcctcactaacacctcaattctcatacagCTTTTGCAGGCTGTGATACAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACCATCATTGAAATGTTCACTGGGA
Basic information
species | Glycine max |
transcript | GLYMA17G20460.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G20460.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G66850.1 (Arabidopsis thaliana), 3'ss of exon 7
------------gtatattctt---actctacattaccctgtaatgtccatctcacacattcct-cactaacacctcaatt--ctcatacagCTTTTGCAGGCTGTGATACAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACCATCATTGAAATGTTCACTGGGA
||| |||| | | || || || ||| | || | | | || | ||||| | | || |||| |||||| |||| |||||||| ||||| |||| || ||| ||||| ||||||||| ||||||| |||||||| || ||||| |||||||| |||||||||||||
gtggtcattgttctatgatctttgaaataaactagactctataaaccctatat-atatatatatatactaatatatacgtttactcacacagCTCATGCAAGCTGTGATGCAAAAAGATAGCAACCCAGATCTGGCTTTTGCTGTTGATATATGGAGTTTAGGATGTACAATCATTGAGATGTTCACTGGGA
upper sequence: GLYMA17G20460.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 3'ss of exon 6
gtatattcttact-ctacattaccctgtaatgtccatctcacacattcctca--ctaacacc-tcaattctcatacagCTTTTGCAGGCTGTGATACAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACCATCATTGAAATGTTCACTGGGA
|| | || | | |||||||| | || |||| ||||||| | || ||| | | | || ||||| |||| |||||||| || || ||| | || |||||||||| |||||| ||||||| ||||||||||||||||| || ||||||||| | | ||| |
gtgtgttataggtgctacattaattctttata---atctatggcattcctaattctgacatcattgtctttctggcagCTCATGCAAGCTGTGATGCAGAAAGATCATAGTTCTGATCTTGCCTTTGCTGTTGATATATGGAGTTTGGGTTGTACTATTATTGAAATGCTGAATGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taccctgtaatgtccatctcacacattcctcactaacacctcaattctcatacagCTTTTGCAGGCTGTGATACAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACCATCATTGAAATGTTCACTGGGA
cactaac putative branch site (score: 1)
ttctcat putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatattcttactctacattaccctgtaatgtccatctcacacattcctcactaacacctcaattctcatacagCTTTTGCAGGCTGTGATACAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTTTGGGTTGTACCATCATTGAAATGTTCACTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG