1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cccttccttaaccacccaaccaacttatgtgatagtgtaacaatgtatttcaattaaattcttagagaatttgactaatgagtgtgcaattcattgtcagGATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAAGTTTCGTCAAATTGTTAAAGCTCTAGTTACTCATTCTCTGGAGAAAGAC
species | Glycine max |
transcript | GLYMA17G20190.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGATTCATGATGCTCTTAGAGCTGCTCAAATCGAGGGAATTTCAAGAAG GATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAAEST: gi|16995733|gb|BM085105.1|BM085105
genomic: ATGATTCATGATGCTCTTAGAGCTGCTCAAATCGAGGGAATTTCAAGAAGgtaagtgatc ... tcattgtcagGATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAA
EST: ATGATTCATGATGCTCTTAGAGCTGCTCAAATCGAGGGAATTTCAAGAAG GATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAAEST: gi|51341428|gb|CO982745.1|CO982745
genomic: ATGATTCATGATGCTCTTAGAGCTGCTCAAATCGAGGGAATTTCAAGAAGgtaagtgatc ... tcattgtcagGATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAA
EST: ATGATTCATGATGCTCTTAGAGCTGCTCAAATCGAGGGAATTTCAAGAAG GATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAA
genomic: ATGATTCATGATGCTCTTAGAGCTGCTCAAATCGAGGGAATTTCAAGAAGgtaagtgatc ... tcattgtcagGATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAA
tatttcaattaaattcttagagaatttgactaatgagtgtgcaattcattgtcagGATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAAGTTTCGTCAAATTGTTAAAGCTCTAGTTACTCATTCTCTGGAGAAAGAC
gactaat putative branch site (score: 2)
aattaaattcttagag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccttccttaaccacccaaccaacttatgtgatagtgtaacaatgtatttcaattaaattcttagagaatttgactaatgagtgtgcaattcattgtcagGATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAAGTTTCGTCAAATTGTTAAAGCTCTAGTTACTCATTCTCTGGAGAAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-ccttcct
- - - - taaccac
- - - - - - - -ccaacca
- - - - - - - - - - - - - - - gatagtg
- - - - - - - - - - - - - - - - - - - - caatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtgtg