1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatttaatccatgttccaacatgtcattgggacctaaccaattagtttatactgtaatttaacaattctccgttatcggttttaattatttcaatatatcggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAACAGCAAGAGAAGCAATG
species | Glycine max |
transcript | GLYMA17G17790.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAEST: gi|209710356|gb|BW681255.1|BW681255
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: AAATTTATCAATGCAGATAATCAACATCCTTGT-TACTCCTGAG GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTEST: gi|16345458|gb|BI971053.1|BI971053
genomic: AAATTTATCAATGCAGATAATCAACAT-CTTGTGT-CTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCT
EST: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAEST: gi|16283183|gb|BI945415.1|BI945415
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGTTAEST: gi|151412099|gb|EV281911.1|EV281911
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAEST: gi|6667566|gb|AW279017.1|AW279017
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGTTAEST: gi|209714912|gb|BW682077.1|BW682077
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAEST: gi|58018593|gb|CX705335.1|CX705335
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAEST: gi|26059174|gb|CA802088.1|CA802088
genomic: CTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
EST: CAACATCTTGTGTCTCCTGAG GCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
genomic: CAACATCTTGTGTCTCCTGAGgtaatttaat ... ggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTA
aatttaacaattctccgttatcggttttaattatttcaatatatcggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAACAGCAAGAGAAGCAATG
ttttaat putative branch site (score: 3)
ttatcggttttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttaatccatgttccaacatgtcattgggacctaaccaattagtttatactgtaatttaacaattctccgttatcggttttaattatttcaatatatcggacatgcagGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAACAGCAAGAGAAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA