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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgactaattccagagtttcttttactctggctcctagaaaattgtagatgatgtattattgttggtctctgaatttcagGCCTGAGACACTCATAGGTTACTCACTTGGGGCAAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTG

Basic information

species Glycine max
transcript GLYMA17G17160.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G17160.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 3'ss of exon 10
-----------gtatttga-ctaattccagagtttcttttactctggctcctagaaaattgtagatgatgta--------ttattgttgg----tctctgaattt--cagGCCTGAGACACTCATAGGTTACTCACTTGGGGCAAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTG
           ||||   |  ||||      |||| ||  | |||   |  |   ||    |  ||||  ||        |   | ||||    ||  || ||||  |||||||| ||||||| |||||||||| ||||| ||| |||| |||||||||||||| |||||||||||| |||||||| |   ||
gtaaatgggtggtatcaaagttaatgatgtggtttattccattcttattagttctaagagttgaatgacttaattaaaattctctcttgggctttccttggatttttcagGCCTGTGACACTCGTAGGTTACTCTCTTGGAGCACGAGTGATTTTCAAGTGTCTGCAGTATTTGGCTGAAACTGAACAAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctggctcctagaaaattgtagatgatgtattattgttggtctctgaatttcagGCCTGAGACACTCATAGGTTACTCACTTGGGGCAAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTG
                                         tctct  CT-rich tract
                          atgtattatt  TA-rich tract